getSpeciesSpecificEnsemblGenesForExFactor


URI of the experimental factor search term


exfactor

taxon


Optional limit to number of genes returned (default is all)


limit


        The location of the SPARQL endpoint - default value is live Atlas endpoint
    

endpoint


Get the ENSEMBL gene IDs and names which are reported as differentially expressed in Atlas for a specified conditions and species.


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

getSpeciesSpecificEnsemblGenesForExFactor function

URI of the experimental factor search term

Optional limit to number of genes returned (default is all)

The location of the SPARQL endpoint - default value is live Atlas endpoint

Get the ENSEMBL gene IDs and names which are reported as differentially expressed in Atlas for a specified conditions and species.

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getSpeciesSpecificEnsemblGenesForExFactor: Get ENSEMBL genes which have been differentially expressed for a given condition and species.

Description

Usage

Arguments

Value

Examples