getTaxonURI

taxonName


Convenience method to the ontology URI, used in other queries, based on an input common or taxonomic name such as "human" or "Homo sapiens"


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

getTaxonURI function

Convenience method to the ontology URI, used in other queries, based on an input common or taxonomic name such as "human" or "Homo sapiens"

getTaxonURI: Get URI of a taxon class based on the common or taxonomic name.

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