searchForEFOTerms


        Search string to find the EFO class URI by
    

label


        SPARQL endpoint to query data from. Default value is the live Atlas SPARQL endpoint but this can be overidden.     
    

endpoint


    Finds any EFO ontology class whose label matches the given search label or part of it. 


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

searchForEFOTerms function

Search string to find the EFO class URI by

SPARQL endpoint to query data from. Default value is the live Atlas SPARQL endpoint but this can be overidden.

Finds any EFO ontology class whose label matches the given search label or part of it.

searchForEFOTerms: Search for EFO URIs from a given label text

Description

Usage

Arguments

Value

Examples