transcription_pathway_enrichment


A result set example from running the Atlas Expression gene set enrichment function. The gene list was originally extracted form a transcription pathways in Reactome and enrichment performed to see which experimental factors were enriched for this pathway.


datasets

Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

transcription_pathway_enrichment function

Format

Gene Expression Atlas RDF at European Bioinformatics Institute

Source

A result set example from running the Atlas Expression gene set enrichment function. The gene list was originally extracted form a transcription pathways in Reactome and enrichment performed to see which experimental factors were enriched for this pathway.

transcription_pathway_enrichment: Expression Gene Set Enrichment result for

Description

Usage

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Source