vizPvalues


        A set of results following an AtlasRDF gene set enrichment. 


resultset


 
        The p-value threshold at which to include a gene for visualization


cutoff


Produce a plot of the most enriched experimental factors following an Atlas gene set enrichment. The cutoff allows a filter to be placed by p-value.


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

vizPvalues function

A set of results following an AtlasRDF gene set enrichment.

The p-value threshold at which to include a gene for visualization

Produce a plot of the most enriched experimental factors following an Atlas gene set enrichment. The cutoff allows a filter to be placed by p-value.

vizPvalues: Visualize the results of an enrichment filtering for a specificed p-value.

Description

Usage

Arguments

Value

Examples