AutoPipe (version 0.1.6)

cons_clust: A function to plot do a Consensus clustering to validate the results

Description

this function calls the ConsensusClusterPlus function with thedaraset and plots a plot with the heatmaps of the clustering for each number of clusters from 2 to max_clust

Usage

cons_clust(data,max_clust,TOPgenes)

Arguments

data

this is the data for the ConsensusClusterPlus

max_clust

the max number of clusters that should be evaluated.

TOPgenes

the number of the top genes to choose for the clustering

Value

plots a plot with all the heatmaps from the ConsensusClusterPlus for the number ofd clusters 2 to max_clust the same return value as the COnsensusClusterPlus

Examples

# NOT RUN {
data(rna)
cons_clust(rna,5,TOPgenes=50)

# }