read_expression_file

file

The format of the table "csv" or "txt"

format

Genes are given in "SYMBOL" or "ENTREZID"

gene_name

Need Matrix Transpose TRUE or FALSE

Trans

This function is used to upload a table into R for further use in the AutoPipe

An unsupervised fully-automated pipeline for transcriptome analysis or a supervised option to identify characteristic genes from predefined subclasses.
We rely on the 'pamr' <http://www.bioconductor.org/packages//2.7/bioc/html/pamr.html> clustering algorithm to cluster the Data and then draw a heatmap of the clusters with the most significant genes and the
least significant genes according to the 'pamr' algorithm. This way we get easy to grasp heatmaps that show us for each cluster which are the clusters most defining genes.

read_expression_file: Input Expression File

Description

Usage

Arguments

Value