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BACA (version 1.3)

Bubble Chart to Compare Biological Annotations by using DAVID

Description

R-based graphical tool to concisely visualise and compare biological annotations queried from the DAVID web service. It provides R functions to perform enrichment analysis (via DAVID - http://david.abcc.ncifcrf.gov) on several gene lists at once, and then visualizing all the results in one generated figure that allows R users to compare the annotations found for each list.

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Version

Install

install.packages('BACA')

Monthly Downloads

16

Version

1.3

License

GPL (>= 2)

Maintainer

Vittorio Fortino

Last Published

May 27th, 2015

Functions in BACA (1.3)

gene.lists.ex

Eight gene lists
BACA-package

A graphical tool to visualize and compare functional annotations retrieved from DAVID knowledgebase.
Jplot

To compute and visualize Jaccard similarity score between two enrichment analysis results.
DAVIDsearch

Get functional annotation charts of gene lists using DAVID.
BBplot

To compare enriched functional annotations found by using DAVID webservice.
result.kegg

David search results