BALCONY (version 0.2.10)

RealValET_conservativity: Calculate real-value Evolutionary Trace (ET)

Description

This function allows to calculate real-valued ET for MSA.

Usage

RealValET_conservativity(alignment)

Arguments

alignment

Alignment data read with read.alignment() function

Value

\ itemxA vector of real valued ET score corresponding to each MSA column

Details

Here, the real-valued ET is calculated using an evolutionary tree calculated for given alignment. The tree is calculated using UPGMA method. Real-valued ET score can be used as complimentary analysis of evolutionary entropy measures.

References

Mihalek, Res, Lichtarge, 2004

Examples

# NOT RUN {
data("small_alignment")
alignment = small_alignment
weights = get_seq_weights(alignment)
# }