alignment

was performed on a dataset comprising 311 soluble epoxide hydrolase peptide orthologous sequences acquired from UniProtKB. The alignment was performed and edited with MUSCLE algorithm in JALVIEW, respectively.

datasets

Facilitates the evolutionary analysis and structure conservation study of specified amino acids in proteins.

Michac5<82> Stolarczyk

BALCONY

Better ALignment CONsensus analYsis

Michal Stolarczyk

Alicja Pluciennik

alignment function

An alignment object read with <code><a rd-options="seqinr" href="/link/read.alignment?package=BALCONY&version=0.2.10&to=seqinr" data-mini-rdoc="seqinr::read.alignment">read.alignment</a></code> function from seqinr package.<dl class="dl-horizontal">
 <dt>alignment$nb</dt><dd>A numeric: number of sequences</dd>
 <dt>alignment$nam</dt><dd>A vector of characters: names of the sequences</dd>
 <dt>alignment$seq</dt><dd>A vector of characters: amino acid sequences</dd>
 </dl>

Format

Sample alignment of soluable epoxide hydrolase family — alignment

An alignment object read with <code><a rd-options='seqinr' href='read.alignment'>read.alignment</a></code> function from seqinr package.<dl class='dl-horizontal'>
 <dt>alignment$nb</dt><dd>A numeric: number of sequences</dd>
 <dt>alignment$nam</dt><dd>A vector of characters: names of the sequences</dd>
 <dt>alignment$seq</dt><dd>A vector of characters: amino acid sequences</dd>
 </dl>

alignment: Sample alignment of soluable epoxide hydrolase family

Description

Arguments

Format

References

Examples