BALCONY (version 0.2.10)

pairwise_alignment_MSA: Calculate pairwise alignment for whole MSA

Description

For given alignment calculate pariwise alignments and returns alignment score.

Usage

pairwise_alignment_MSA(alignment)

Arguments

alignment

An alignment object read with read.alignment function

Value

score_mtx

Matrix of alignment scores

%% \item{comp2 }{Description of 'comp2'} %% ...

Examples

# NOT RUN {
data("small_alignment")
# }
# NOT RUN {
pairwiseAlignemnt_scores=pairwise_alignment_MSA(small_alignment)
# }