getmrca

Calculates the most recent common ancestor for each pair of
 tips. Used internally by <code>getEventData</code>.

manip

Provides functions for analyzing and visualizing complex
macroevolutionary dynamics on phylogenetic trees. It is a companion
package to the command line program BAMM (Bayesian Analysis of
Macroevolutionary Mixtures) and is entirely oriented towards the analysis,
interpretation, and visualization of evolutionary rates. Functionality
includes visualization of rate shifts on phylogenies, estimating
evolutionary rates through time, comparing posterior distributions of
evolutionary rates across clades, comparing diversification models using
Bayes factors, and more.

Pascal Title

BAMMtools

Analysis and Visualization of Macroevolutionary Dynamics on
Phylogenetic Trees

Dan Rabosky

Michael Grundler

Carlos Anderson

Jeff Shi

Joseph Brown

Huateng Huang

Jon Mitchell

getmrca function

<dl><dt>phy</dt>
<dd>An object of class <code>phylo</code>.</dd>
<dt>t1</dt>
<dd>A vector of mode integer or character corresponding to tips in
<code>phy</code>.</dd>
<dt>t2</dt>
<dd>A vector of mode integer or character corresponding to tips in
<code>phy</code>.</dd></dl>

Arguments

Author

Find most recent common ancestors — getmrca

<dl>

<dt>phy</dt>
<dd>An object of class <code>phylo</code>.</dd>


<dt>t1</dt>
<dd>A vector of mode integer or character corresponding to tips in
<code>phy</code>.</dd>


<dt>t2</dt>
<dd>A vector of mode integer or character corresponding to tips in
<code>phy</code>.</dd>

</dl>

Find most recent common ancestors

getmrca: Find most recent common ancestors

Description

Usage

Value

Arguments

Author

Details

See Also