Subnetwork.Select: Summarize the information of the sub networks selected by `Network.Fast()` and `Network.STD()`

Description

This function is to Summarize the information of the sub networks selected by Network.Fast() and Network.STD(). If the marginal distribution of a certain node is larger than 0.5, we consider this node as selected. The aim of this function is to customize the process of summarizing.

Usage

Subnetwork.Select(net,trace,node.based=NULL,infinite=TRUE,steps=5)

Arguments

net

an "n" by "n" binary (0/1) adjacent matrix of network configurations, where n=length(pvalue); same as the argument net in function Network.STD and Network.Fast

trace

the trace (results of each iteration) generated by the functions Networks.STD() and Networks.Fast().Please set as trace=total$trace where total is the output of the two functions, Networks.STD() and Networks.Fast(); you can also provide a binary 1 by "n" matrix representing the "important"(1) and "unimportant"(0) nodes

node.based

a vector representing the orders of the nodes the sub network centered

infinite

a logical variable indicating whether the expanding of sub network in a "infinite" pattern or not; infinite=TRUE if searching the "important" sub network based on one node without the limitation of maximum steps; infinite=FALSE if searching the sub network under a regulated way

steps

a number representing the maximum steps for expanding the sub network

Value

a list of values containing the the information of the sub networks selected by Network.Fast() and Network.STD()

eids: a vector of order representing the selected nodes
adj: a "m" by "m" binary adjacent matrix of the sub network configurations where n=length(eids)