createedges

A function that from a biological sequence generates a graph
not addressed having as words vertices, this being able to have its size
parameter set by the' word 'parameter. The connections between words depend
of the' step 'parameter that indicates the next connection to be formed

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of maximum entropy for the purpose of making a classification between the classes of the sequences. There are two data present in the 'BASiNET' package, "mRNA", and "ncRNA" with 10 sequences. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples.

Fabricio Martins Lopes

BASiNETEntropy

Classification of RNA Sequences using Complex Network and
Information Theory

Murilo Montanini Breve

Matheus Henrique Pimenta-Zanon

createedges function

<dl><dt>sequence</dt>
<dd>It is a vector that represents the sequence</dd>
<dt>word</dt>
<dd>This integer parameter decides the size of the word that will
be formed</dd>
<dt>step</dt>
<dd>It is the integer parameter that decides the step that will
be taken to make a new connection</dd></dl>

Arguments

Author

Creates an untargeted graph from a biological sequence — createedges

<dl>

<dt>sequence</dt>
<dd>It is a vector that represents the sequence</dd>


<dt>word</dt>
<dd>This integer parameter decides the size of the word that will
be formed</dd>


<dt>step</dt>
<dd>It is the integer parameter that decides the step that will
be taken to make a new connection</dd>

</dl>

createedges: Creates an untargeted graph from a biological sequence

Description

Usage

Value

Arguments

Author