creatingDataframe

A function that from the complex network topological measures
create the feature matrix.

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of maximum entropy for the purpose of making a classification between the classes of the sequences. There are two data present in the 'BASiNET' package, "mRNA", and "ncRNA" with 10 sequences. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples.

Fabricio Martins Lopes

BASiNETEntropy

Classification of RNA Sequences using Complex Network and
Information Theory

Murilo Montanini Breve

Matheus Henrique Pimenta-Zanon

creatingDataframe function

<dl><dt>measures</dt>
<dd>The complex network topological measures</dd>
<dt>tamM</dt>
<dd>mRNA sequence size</dd>
<dt>tamLNC</dt>
<dd>lncRNA sequence size</dd>
<dt>tamSNC</dt>
<dd>snRNA sequence size</dd></dl>

Arguments

Author

Creates a feature matrix using complex network topological measures — creatingDataframe

<dl>

<dt>measures</dt>
<dd>The complex network topological measures</dd>


<dt>tamM</dt>
<dd>mRNA sequence size</dd>


<dt>tamLNC</dt>
<dd>lncRNA sequence size</dd>


<dt>tamSNC</dt>
<dd>snRNA sequence size</dd>

</dl>

creatingDataframe: Creates a feature matrix using complex network topological measures

Description

Usage

Value

Arguments

Author