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Install
install.packages('BAT')
Monthly Downloads
1,302
Version
2.1.1
License
GPL-3
Maintainer
Pedro Cardoso
Last Published
August 29th, 2020
Functions in BAT (2.1.1)
Search functions
alpha.accum
Alpha diversity accumulation curves (observed and estimated).
contribution
Contribution of species or individuals to total phylogenetic/functional diversity.
alpha
Alpha diversity (Taxon, Phylogenetic or Functional Diversity - TD, PD, FD).
beta
Beta diversity (Taxon, Phylogenetic or Functional Diversity - TD, PD, FD).
accuracy
Scaled mean squared error of accumulation curves.
beta.accum
Beta diversity accumulation curves.
arrabida
Sample data of spiders in Arrabida (Portugal)
cwm
Community Weighted Mean.
beta.multi
Beta diversity among multiple communities.
alpha.estimate
Alpha diversity estimates.
optim.alpha.stats
Efficiency statistics for alpha-sampling.
kernel.alpha
Alpha diversity using kernel density hypervolumes.
kernel.evenness
Functional evenness of a n-dimensional hypervolume representing a given community.
kernel.dispersion
Functional dispersion of a n-dimensional hypervolume representing a given community.
iaor
Interspecific abundance-occupancy relationship (IAOR).
dispersion
Phylogenetic/functional dispersion of species or individuals.
kernel.originality
Functional originality of observations (species or individuals) in a n-dimensional hypervolume representing a given species or community.
sad
Species-abundance distribution (SAD).
evenness
Phylogenetic/functional evenness of species or individuals.
functree
Functional tree for 338 species of spiders
sim.plot
Plots of simulated species spatial distributions.
gdm
General dynamic model of oceanic island biogeography (GDM).
optim.beta
Optimization of beta diversity sampling protocols.
originality
Phylogenetic/functional originality of species or individuals.
phylotree
Taxonomic tree for 338 species of spiders (surrogate for phylogeny)
kernel.beta
Beta diversity partitioning using kernel density hypervolumes.
kernel.contribution
Contribution of each observation (species or individuals) to the n-dimensional hypervolume representing a given species or community.
linnean
Create Linnean tree.
optim.alpha
Optimization of alpha diversity sampling protocols.
raster.dispersion
Maps of phylogenetic/functional dispersion of species or individuals.
sar
Species-area relationship (SAR).
raster.evenness
Maps of phylogenetic/functional evenness of species or individuals.
sim.sample
Simulation of sampling from artificial communities.
sim.sad
Simulation of species abundance distributions (SAD).
sim.spatial
Simulation of species spatial distributions.
uniqueness
Phylogenetic/functional uniqueness of species.
guadiana
Sample data of spiders in Guadiana (Portugal)
optim.spatial
Optimization of spatial sampling.
optim.beta.stats
Efficiency statistics for beta-sampling.
raster.alpha
Maps of alpha diversity (Taxon, Phylogenetic or Functional Diversity - TD, PD, FD).
raster.beta
Maps of beta diversity (Taxon, Phylogenetic or Functional Diversity - TD, PD, FD).
geres
Sample data of spiders in Geres (Portugal)
slope
Slope of accumulation curves.
sim.tree
Simulation of phylogenetic or functional tree.
kernel.similarity
Pairwise similarity among n-dimensional hypervolumes.