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BBCAnalyzer (version 1.2.0)

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

Description

BBCAnalyzer is a package for visualizing the relative or absolute number of bases, deletions and insertions at defined positions in sequence alignment data available as bam files in comparison to the reference bases. Markers for the relative base frequencies, the mean quality of the detected bases, known mutations or polymorphisms and variants called in the data may additionally be included in the plots.

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Version

Version

1.2.0

License

LGPL-3

Maintainer

Sarah Sandmann

Last Published

February 15th, 2017

Functions in BBCAnalyzer (1.2.0)

BBCAnalyzer-package

\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("#1")}BBCAnalyzerBBCAnalyzer: an R/Bioconductor package for visualizing base counts
analyzeBasesPlotOnly

Plots the number of reads at all previously defined positions
analyzeBases

Analyze the bases at all previously defined positions