FormatTree_bounds

A phylogenetic tree in phylo format.

tree

A vector of traits at the tips of the tree or a list with vectors of multiple measurements for each tip.

trait

A vector giving the evolutionary potential.

A vector of bounds of the trait interval.

bounds

Internal function used for likelihood calculation and simulation.

Provides a set of functions to fit general macroevolutionary models for continuous traits evolving in adaptive landscapes of any shape. This package implements the Fokker-Planck-Kolmogorov model (FPK), in which the trait evolves under random diffusion but is also subject to a force that pulls it towards specific values - this force can be of any shape. FPK has a version in which hard reflective bounds exist at the extremes of the trait interval: this second model is called BBMV.

FormatTree_bounds: Tree formatting.

Description

Usage

Arguments