log_prior_nclades_plus_3_pars

A vector giving the type of prior for each parameter.

type

A list giving the shape of the prior for each parameter.

shape

The parameter values at which the prior should be evaluated.

pars

The number of clades included in the multiclade analysis.

n_clades

Internal function that calculates the log prior, used in MCMC estimation of the BBM+V model.

Provides a set of functions to fit general macroevolutionary models for continuous traits evolving in adaptive landscapes of any shape. This package implements the Fokker-Planck-Kolmogorov model (FPK), in which the trait evolves under random diffusion but is also subject to a force that pulls it towards specific values - this force can be of any shape. FPK has a version in which hard reflective bounds exist at the extremes of the trait interval: this second model is called BBMV.

log_prior_nclades_plus_3_pars: Prior function.

Description

Usage

Arguments