proposal_nclades_plus_3_pars

The type of proposal function, only 'Uniform' is available (the default).

type

A numeric vector specifying the width of the uniform proposal for each parameter.

sensitivity

The current parameters in the MCMC chain.

pars

n_clades

Internal function that proposes parameter updates used in MCMC estimation of the BBMV model.

Provides a set of functions to fit general macroevolutionary models for continuous traits evolving in adaptive landscapes of any shape. This package implements the Fokker-Planck-Kolmogorov model (FPK), in which the trait evolves under random diffusion but is also subject to a force that pulls it towards specific values - this force can be of any shape. FPK has a version in which hard reflective bounds exist at the extremes of the trait interval: this second model is called BBMV.

proposal_nclades_plus_3_pars: Parameter update for the multiclade MCMC function

Description

Usage

Arguments