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BCBCSF (version 0.0-2)

d4:analyzefit: Functions for analyzing and visualizing a BCBCSF fitting result

Description

These functions are used to look at the fitting results, especially plot the gene signals.

Usage

reload_fit_bcbcsf (fit_bcbcsf_afile)

bcbcsf_sumfit (fit_bcbcsf = NULL, fit_bcbcsf_afile = NULL, burn = NULL, thin = 1)

bcbcsf_plotsumfit (sum_fit)

Arguments

Value

reload_fit_bcbcsf returns a list of Markov chain fitting results, including how to do feature selection and data preprocessing.

bcbcsf_sumfit returns a list of point estimates of means and variances.

bcbcsf_plotsumfit returns nothing; it plots the normalized means (for each gene, original expression means substracted by their means and divided by the common standard deviation), and overall signals (Euclid distance of normalized means) for the selected features.