BCRANKmatch-class

BCRANKmatch

consensus

bcrankScore

matchVector

Holds the <code><a rd-options="BCRANK:bcrank" href="/link/bcrank?package=BCRANK&version=1.34.0&to=BCRANK%3Abcrank" data-mini-rdoc="BCRANK:bcrank::bcrank">bcrank</a></code> score for one
	IUPAC consensus sequence. Several objects of this class are
	collected in a
	<code><a rd-options="BCRANK:BCRANKsearch-class" href="/link/BCRANKsearch-class?package=BCRANK&version=1.34.0&to=BCRANK%3ABCRANKsearch-class" data-mini-rdoc="BCRANK:BCRANKsearch-class::BCRANKsearch-class">BCRANKsearch-class</a></code> object

classes

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Adam Ameur

BCRANK

Predicting binding site consensus from ranked DNA sequences

BCRANKmatch-class function

Objects are not intended to be created directly but as a result from
  running <code><a rd-options="BCRANK:bcrank" href="/link/bcrank?package=BCRANK&version=1.34.0&to=BCRANK%3Abcrank" data-mini-rdoc="BCRANK:bcrank::bcrank">bcrank</a></code>.

Objects from the Class

<dl>
    <dt><code>consensus</code>:</dt><dd>consensus sequence in IUPAC coding</dd> <dt><code>bcrankScore</code>:</dt><dd>bcrank score for the consensus</dd> <dt><code>matchVec</code>:</dt><dd>vector with 0's (no match) and 1's (match)
	  of same length as the ranked DNA sequences</dd> </dl> 

Slots

<dl>
    <dt>consensus</dt><dd><code>signature(object = "BCRANKmatch")</code>: Returns
	  the consensus sequence.</dd> <dt>bcrankScore</dt><dd><code>signature(object = "BCRANKmatch")</code>: Returns
	  the bcrank score.</dd> <dt>matchVector</dt><dd><code>signature(object = "BCRANKmatch")</code>: Returns
	  a vector with 0's (no match) and 1's (match) of same length and
	  order as the ranked DNA sequences.</dd> </dl> 

Methods

Holds the <code><a href="bcrank" rd-options="BCRANK:bcrank">bcrank</a></code> score for one
	IUPAC consensus sequence. Several objects of this class are
	collected in a
	<code><a href="BCRANKsearch-class" rd-options="BCRANK:BCRANKsearch-class">BCRANKsearch-class</a></code> object

BCRANKmatch-class: Class "BCRANKmatch"

Description

Arguments

Objects from the Class

Slots

Methods

See Also