BCellMA (version 0.3.2)

aa_plot: Plot of average frequency of nucleotide mutations resulting in amino acid substitution

Description

The average frequency of nucleotide mutations resulting in amino acid substitution can be plotted as an aa_plot().

Usage

aa_plot(data, text, legend.position, characteristics)

Arguments

data

Results from the function aa_dist or aa_cdr3_dist.

text

The legend of the plot.

legend.position

The position of the legend. It can be "none","left", "right", "bottom", "top".

characteristics

is a data set "data(Klassen)" in this package

Value

Output is the plot of average frequency of nucleotide mutations resulting in amino acid substitution. The classes are divided according to IMGT.

References

Pommie C., Levadoux S., Sabatier R., Lefranc G., and Lefranc MP. IMGT standardizedcriteria for statistical analysis of immunoglobulin V-REGION amino acid properties.J MolRecognit, 17(1):17-32, 2004.

Examples

data(IMGTtab7)
Regions<-cbind(IMGTtab7$FR1_IMGT,IMGTtab7$CDR1_IMGT)
allRegions_matrix<-aa_dist(Regions)
data(Klassen)
aa_plot(allRegions_matrix, "Amino acid Distribution", "right", Klassen)