BDgraph (version 2.22)

traceplot: Trace plot of graph size

Description

Trace plot for graph size for the objects of S3 class "bdgraph", from function bdgraph. It is a tool for monitoring the convergence of the BD-MCMC sampling algorithm.

Usage

traceplot ( output, acf = FALSE, pacf = FALSE, main = NULL, ... )

Arguments

output

An object of S3 class "bdgraph", from function bdgraph.

acf

Logical: if TRUE you will see the plot of autocorrelation functions for graph size. The default is FALSE.

pacf

Logical: if TRUE you will see the plot of partial autocorrelations for graph size. The default is FALSE.

main

Graphical parameter (see plot).

...

System reserved (no specific usage).

References

Mohammadi, A. and E. Wit (2015). Bayesian Structure Learning in Sparse Gaussian Graphical Models, Bayesian Analysis, 10(1):109-138 Mohammadi, A. and E. Wit (2015). BDgraph: An R Package for Bayesian Structure Learning in Graphical Models, Arxiv preprint arXiv:1501.05108v2 Mohammadi, A., F. Abegaz Yazew, E. van den Heuvel, and E. Wit (2015). Bayesian Modeling of Dupuytren Disease Using Gaussian Copula Graphical Models, Arxiv preprint arXiv:1501.04849v2

See Also

bdgraph

Examples

# generating multivariate normal data from a 'random' graph
data.sim <- bdgraph.sim( n = 50, p = 6, size = 7, vis = TRUE )

output   <- bdgraph( data = data.sim, iter = 10000, burnin = 0 )

traceplot(output)

traceplot( output, acf = TRUE, pacf = TRUE )