BDgraph (version 2.57)

traceplot: Trace plot of graph size

Description

Trace plot for graph size for the objects of S3 class "bdgraph", from function bdgraph. It is a tool for monitoring the convergence of the sampling algorithms, BDMCMC and RJMCMC.

Usage

traceplot ( bdgraph.obj, acf = FALSE, pacf = FALSE, main = NULL, ... )

Arguments

bdgraph.obj

An object of S3 class "bdgraph", from function bdgraph. It also can be an object of S3 class "ssgraph", from the function ssgraph of R package ssgraph.

acf

Visualize the autocorrelation functions for graph size.

pacf

Visualize the partial autocorrelations for graph size.

main

Graphical parameter (see plot).

…

System reserved (no specific usage).

References

Mohammadi, A. and Wit, E. C. (2015). Bayesian Structure Learning in Sparse Gaussian Graphical Models, Bayesian Analysis, 10(1):109-138

Mohammadi, A. and Wit, E. C. (2017). BDgraph: An R Package for Bayesian Structure Learning in Graphical Models, arXiv preprint arXiv:1501.05108v5

Dobra, A. and Mohammadi, R. (2018). Loglinear Model Selection and Human Mobility, Annals of Applied Statistics, 12(2):815-845

Mohammadi, A. et al (2017). Bayesian modelling of Dupuytren disease by using Gaussian copula graphical models, Journal of the Royal Statistical Society: Series C, 66(3):629-645

Mohammadi, A. and Dobra, A. (2017). The R Package BDgraph for Bayesian Structure Learning in Graphical Models, ISBA Bulletin, 24(4):11-16

See Also

plotcoda, bdgraph, bdgraph.mpl

Examples

# NOT RUN {
# Generating multivariate normal data from a 'random' graph
data.sim <- bdgraph.sim( n = 50, p = 6, size = 7, vis = TRUE )
   
bdgraph.obj <- bdgraph( data = data.sim, iter = 10000, burnin = 0, save = TRUE )
   
traceplot( bdgraph.obj )
   
traceplot( bdgraph.obj, acf = TRUE, pacf = TRUE )
# }