BDgraph (version 2.6)

plot.bdgraph: Plot function for "bdgraph" output

Description

According to output of the BD-MCMC algorithm, this function gives us the plot.

Usage

## S3 method for class 'bdgraph':
plot(x, g = 1, layout = layout.circle, ...)

Arguments

x

an object with S3 class "bdgraph". A list which is the result of the BD-MCMC algorithm from the 'bdgraph' function.

g

you can select the number of graphical models with highest probabilities (default is 1).

layout

the vertex placement algorithm which is according to igraph package. The default is "layout.circle".

...

system reserved (no specific usege).

References

Mohammadi, A. and E. C. Wit (2012). Gaussian graphical model determination based on birth-death MCMC inference, arXiv:1210.5371v4. http://arxiv.org/abs/1210.5371v4

See Also

bdgraph

Examples

# generate the data from multivariate normal distribution
  data.sim <- bdgraph.sim(n = 100, p = 8, vis = T)
  
  output <- bdgraph(data.sim, meanzero = T, iter = 2000)
  
  plot(output)
  
  plot(output, g = 4)