BDgraph (version 2.6)

summary.bdgraph: Summary function for "bdgraph" output

Description

This function gives us a summary of the result from BD-MCMC algorithm according to output from "bdgraph" function.

Usage

## S3 method for class 'bdgraph':
summary(object, plot = TRUE, layout = layout.circle, ...)

Arguments

object

an object with S3 class "bdgraph". A list which is the result of the BD-MCMC algorithm from the 'bdgraph' function.

plot

logical: if TRUE (default) you will see the plot result.

layout

the vertex placement algorithm which is according to igraph package. The default is "layout.circle".

...

system reserved (no specific usege).

References

Mohammadi, A. and E. C. Wit (2012). Gaussian graphical model determination based on birth-death MCMC inference, arXiv:1210.5371v4. http://arxiv.org/abs/1210.5371v4

See Also

bdgraph

Examples

# generate the data from multivariate normal distribution
  data.sim <- bdgraph.sim(n = 100, p = 8, vis = T)
  
  output <- bdgraph(data.sim, meanzero = T, iter = 2000)
  
  summary(output)
  
  summary(output, plot = FALSE)