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BEAT (version 1.10.0)
BEAT - BS-Seq Epimutation Analysis Toolkit
Description
Model-based analysis of single-cell methylation data
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Version
1.10.0
1.8.0
1.6.0
1.4.0
Version
1.10.0
License
LGPL (>= 3.0)
Maintainer
Kemal Akman
Last Published
February 15th, 2017
Functions in BEAT (1.10.0)
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BEAT
BEAT - BS-Seq Epimutation Analysis Toolkit
positions.reference
Sample dataset of CpG positions for a reference BS-Seq sample
generate_results
Computes model methylation states for genomic region counts of a list of samples.
positions_to_regions
Converts methylation counts for single genomic positions to counts for genomic regions
epimutation_calls
Returns epimutation rates and sites.
makeParams
Creates a parameter object of arguments to be used with other BEAT functions.
positions
Sample dataset of CpG positions for a single cell BS-seq sample