BED (version 1.5.2)

exploreConvPath: Explore the shortest convertion path between two identifiers

Description

This function uses visNetwork to draw all the shortest convertion paths between two identifiers (including ProbeID).

Usage

exploreConvPath(
  from.id,
  to.id,
  from,
  from.source,
  to,
  to.source,
  edgeDirection = FALSE,
  verbose = FALSE
)

Arguments

from.id

the first identifier

to.id

the second identifier

from

the type of entity: listBe() or Probe. Guessed if not provided

from.source

the identifier source: database or platform. Guessed if not provided

to

the type of entity: listBe() or Probe. Guessed if not provided

to.source

the identifier source: database or platform. Guessed if not provided

edgeDirection

a logical value indicating if the direction of the edges should be drawn.

verbose

if TRUE the cypher query is shown

Examples

if (FALSE) {
exploreConvPath(
   from.id="ENST00000413465",
   from="Transcript", from.source="Ens_transcript",
   to.id="ENSMUST00000108658",
   to="Transcript", to.source="Ens_transcript"
)
}