ex.corrected.data


Example matrix containing a already batch effect corrected sample matrix of
beta values from breast invasive carcinoma TCGA methylation data. The matrix
contains a small amount of wrongly predicted beta values to show the operating
principles of some of the methods from the BEclear package.


datasets

BEclear

ex.data

Provides some functions to detect and correct for batch effects in
DNA methylation data. The core function "BEclear" is based on latent factor
models and can also be used to predict missing values in any other matrix
containing real numbers.

Markus Merl

Correct for batch effects in DNA methylation data

ex.corrected.data function

A matrix containing already corrected beta values of some samples from
the breast invasive carcinoma TCGA methylation data. The colnames denote
samples, rownames denote gene names.

Format

Source

Example matrix containing a already batch effect corrected sample matrix of
beta values from breast invasive carcinoma TCGA methylation data. The matrix
contains a small amount of wrongly predicted beta values to show the operating
principles of some of the methods from the BEclear package.

ex.corrected.data: Example matrix of corrected data for the BEclear-package

Description

Usage

Arguments

Value

Format

Source