BGGM (version 1.0.0)

plot.select.estimate: Plot select.estimate Network

Description

Plot select.estimate Network

Usage

# S3 method for select.estimate
plot(
  x,
  layout = "circle",
  edge_colors = "classic",
  node_labels = NULL,
  node_labels_color = "black",
  node_groups = NULL,
  node_outer_size = 12,
  node_inner_size = 11,
  alpha = 0.5,
  txt_size = 8,
  edge_multiplier = 1,
  ...
)

Arguments

x

object of class select.estimate

layout

network layout (gplot.layout)

edge_colors

color theme for positive and negative edges

node_labels

node labels

node_labels_color

node labels color

node_groups

node group indicator

node_outer_size

node border size

node_inner_size

node size

alpha

edge transparency

txt_size

node text size

edge_multiplier

constant to change edge width (egde * edge_multiplier)

...

additional arguments (ggnet2)

Value

object of class ggplot

Examples

# NOT RUN {
Y <- BGGM::bfi[, 1:20]

# analytic approach (sample by setting analytic = FALSE)
fit_analytic <- estimate(Y, analytic = TRUE)

# select the graph (edge set E)
E <- select(fit_analytic, ci_width = 0.95)

# plot
plt <- plot(E,
            node_labels = letters[1:20],
            node_labels_color = "white",
            node_groups = rep(c("1", "2", "3", "4"), each = 5),
            edge_colors = "classic",
            alpha = 0.5, palette = "Set2")
# }