BGPhazard (version 2.1.1)

CuPlotDiag: Diagnosis plots for Lambda, U, C, Mu, Pi, Z and Epsilon

Description

Diagnostics plots for hazard rate (Lambda), latent variable (U), dependence variable (C), mean of cure threshold (Mu), cure proportion (Pi), cure threshold (Z) and the parameter of the hierarchical prior (Epsilon).

Usage

CuPlotDiag(M, variable = "Lambda", pos = 1)

Arguments

M

List. Contains the output by CuMRes.

variable

Either "Lambda", "U", "C", "Mu", "Pi", "Z" or "Epsilon". Variable for which diagnostic plot will be shown.

pos

Positive integer. Position of the selected variable to be plotted.

Details

This function returns a diagnostics plot for which the chain for the selected variable can be monitored. Diagnostics includes trace, ergodic mean, autocorrelation function and histogram.

References

Nieto-Barajas, L. E., & Yin, G. (2008). Bayesian semiparametric cure rate model with an unknown threshold. Scandinavian Journal of Statistics, 35(3), 540-556. https://doi.org/10.1111/j.1467-9469.2007.00589.x

See Also

CuMRes

Examples

## Simulations may be time intensive. Be patient.

## Example 1
# data(crm3)
# times<-crm3$times
# delta<-crm3$delta
# res <- CuMRes(times, delta, type.t = 2, 
#                   K = 100, length = .1, alpha = rep(1, 100  ), 
#                   beta = rep(1, 100),c.r = rep(50, 99), 
#                   iterations = 100, burn.in = 10, thinning = 1, type.c = 2)
# CuPlotDiag(M = res, variable = "Mu")
# CuPlotDiag(M = res, variable = "Z")
# CuPlotDiag(M = res, variable = "Pi")
# CuPlotDiag(M = res, variable = "Lambda", pos = 2)
# CuPlotDiag(M = res, variable = "U", pos = 4)
# CuPlotDiag(M = res, variable = "C", pos = 3)