optim.boxcox

Find optimal Box-Cox transformation parameters

Response surface methods for drug synergy analysis. Available
methods include generalized and classical Loewe formulations as well as Highest
Single Agent methodology. Response surfaces can be plotted in an interactive
3-D plot and formal statistical tests for presence of synergistic effects are
available. Implemented methods and tests are described in the article
"BIGL: Biochemically Intuitive Generalized Loewe null model for prediction
of the expected combined effect compatible with partial agonism and antagonism"
by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas,
Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017)
<doi:10.1038/s41598-017-18068-5>.

Kathy Mutambanengwe

BIGL

Biochemically Intuitive Generalized Loewe Model

Heather Turner

Annelies Tourny

Olivier Thas

Maxim Nazarov

Rytis Bagdziunas

Stijn Hawinkel

optim.boxcox function

<dl><dt>value</dt>
<dd>Response variable in the data, e.g. <code>"effect"</code> column</dd>
<dt>fac</dt>
<dd>Factor indicating groups of replicates, e.g.
<code>interaction(d1,d2)</code></dd>
<dt>shift</dt>
<dd>Whether to use 2-parameter Box-Cox transformation. Input may be
<code>TRUE/FALSE</code> or a numeric value indicating the shift parameter to use.
If <code>FALSE</code>, shift parameter is set to zero.</dd></dl>

Arguments

Find optimal Box-Cox transformation parameters — optim.boxcox

<dl>

<dt>value</dt>
<dd>Response variable in the data, e.g. <code>"effect"</code> column</dd>


<dt>fac</dt>
<dd>Factor indicating groups of replicates, e.g.
<code>interaction(d1,d2)</code></dd>


<dt>shift</dt>
<dd>Whether to use 2-parameter Box-Cox transformation. Input may be
<code>TRUE/FALSE</code> or a numeric value indicating the shift parameter to use.
If <code>FALSE</code>, shift parameter is set to zero.</dd>

</dl>

optim.boxcox: Find optimal Box-Cox transformation parameters

Description

Usage

Value

Arguments

Examples