BIGL (version 1.9.3)

plot.maxR: Plot of maxR object

Description

Plot of maxR object

Usage

# S3 method for maxR
plot(
  x,
  main = "Contour plot for maxR",
  xlab = "Dose (Compound 1)",
  ylab = "Dose (Compound 2)",
  colorPalette = c("blue", "white", "red"),
  logScale = TRUE,
  zTransform = function(z) {
     z
 },
  plevels = c(0.7, 0.8, 0.9, 0.95, 0.99, 0.999),
  cutoff = max(plevels),
  maxshow = NULL,
  reverse.x = FALSE,
  reverse.y = FALSE,
  swapAxes = FALSE,
  ...
)

Arguments

x

Output of maxR. This can also be "maxR" element in the output of fitSurface.

main

Fixed non-moving title for the 3D plot

xlab

X axis label using font, size and color par(c("font.lab", "cex.lab", "col.lab")).

ylab

Y axis label, same font attributes as xlab.

colorPalette

Vector of color names for surface

logScale

Draw doses on log-scale (setting zeroes to be finite constant)

zTransform

Optional transformation function for z-axis. By default, identity function is used.

plevels

Probability levels used to generate a color scale

cutoff

Probability cutoff to use for range of colors

maxshow

Forced value for range of colors

reverse.x

Reverse x axis?

reverse.y

Reverse y axis?

swapAxes

Swap x and y axes?

...

Further arguments that are passed to format function for formatting of axis labels