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BMRV (version 1.32)

Bayesian Models for Rare Variant Association Analysis

Description

Provides two Bayesian models for detecting the association between rare genetic variants and a trait that can be continuous, ordinal or binary. Bayesian latent variable collapsing model (BLVCM) detects interaction effect and is dedicated to twin design while it can also be applied to independent samples. Hierarchical Bayesian multiple regression model (HBMR) incorporates genotype uncertainty information and can be applied to either independent or family samples. Furthermore, it deals with continuous, binary and ordinal traits.

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Version

Install

install.packages('BMRV')

Monthly Downloads

28

Version

1.32

License

GPL (>= 2)

Maintainer

Liang He

Last Published

November 1st, 2016

Functions in BMRV (1.32)

BMRV-package

Bayesian models for rare variant association analysis
blvcm

Bayesian latent variable collapsing model (BLVCM)
hbmr_data

Example data for HBMR
hbmr

Hierarchical Bayesian multiple regression model incorporating genotype uncertainty (HBMR)
blvcm_bin

Bayesian latent variable collapsing model (BLVCM) for binary data with probit link
hbmr_bin

Hierarchical Bayesian multiple regression model incorporating genotype uncertainty (HBMR) for binary traits
hbmr_bin_data

Example data for hbmr_bin
hbmr_ord

Hierarchical Bayesian multiple regression model incorporating genotype uncertainty (HBMR) for ordinal traits
blvcm_bin_data

Example data for BLVCM_bin
blvcm_data

Example data for BLVCM