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BMTME (version 1.0.19)

Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis

Description

Genomic selection and prediction models with the capacity to use multiple traits and environments, through ready-to-use Bayesian models. It consists a group of functions that help to create regression models for some genomic models proposed by Montesinos-Lpez, et al. (2016) also in Montesinos-Lpez et al. (2018) and Montesinos-Lpez et al. (2018) .

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Install

install.packages('BMTME')

Monthly Downloads

85

Version

1.0.19

License

LGPL-3

Issues

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Maintainer

Luna-V<c3><a1>zquez Francisco J.

Last Published

August 26th, 2020

Functions in BMTME (1.0.19)

WheatJapa30

Wheat Japa 30 Data
phenoIranianToy

Phenotypic values of Iranian toy dataset.
plot.BMTME

plot.BMTME Simple scatter plot comparing the observed values against the predicted values.
print.BME

Print BME information object
phenoJapa30

Phenotypic values of Japa dataset.
BMORS_Env

Bayesian Multi-Output regression stacking for specific environment estimations
BMTME

Bayes Multi-Trait Milti-Environment Model (BMTME)
genoIranianToy

Genomic values of Iranian toy dataset.
CV.KFold

Cross-Validation with K Folds
genoJapa30

Genomic values of Japa dataset.
WheatJapa50

Wheat Japa 50 Data
cholesky

Cholesky
detectCores

Detect number of cores
CV.RandomPart

Cross-Validation with Random Partitions
genoMaizeToy

Genomic values of Maize dataset.
MaizeToy

Maize Data
barplot.BMORSENV

barplot BMORSENV graph
BMORS

Bayesian Multi-Output Regression Stacking (BMORS)
boxplot.BMORSCV

boxplot.BMORSCV
BME

Bayesian Multi-Environment Model (BME)
genoWheatToy

Genomic values of Wheat toy dataset.
phenoMaizeToy

Phenotypic values of Maize dataset.
WheatMadaToy

Wheat Mada Data
WheatIranianToy

Wheat Iranian Toy Data
boxplot.BMECV

boxplot.BMECV
genoMada

Genomic values of Mada dataset.
genoJapa50

Genomic values of Japa dataset.
print.BMTME

Print BMTME information object
print.BMTMECV

Print BMTMECV information object
print.BMECV

Print BMECV information object
print.BMORS

Print BMORS information object
WheatToy

Phenotypic values and Genetic values of Wheat toy dataset.
phenoWheatToy

Phenotypic values of Wheat toy dataset.
residuals.BMTME

residuals.BMTME
residuals.BME

residuals.BME
boxplot.BMTMECV

boxplot.BMTMECV
phenoMada

Phenotypic values of Mada dataset.
plot.BME

plot.BME
phenoJapa50

Phenotypic values of Japa dataset.
summary.BMTMECV

summary.BMTMECV
summary.BMORSENV

summary.BMORSENV
plot.BMORSCV

Plot BMORSCV Simple scatter plot comparing the observed values against the predicted values.
print.BMORSENV

Print BMORSENV information object
print.BMORSCV

Print BMORSCV information object
summary.BMECV

summary.BMECV
summary.BMORSCV

summary.BMORSCV