Creates a variance-covariance matrix for a network and parameters.
ComputeVCV(phy.graph, sigma.sq = 1, mu = 0, bt = 1, vh = 0,
SE = 0, measurement.error = 0, gamma = 0.5)An ape::evonet object (a phylogeny stored in phylo format that also includes a reticulation matrix)
Value for sigma squared
Value for state at the root
Value for beta parameter
Value for Vh, the variance that comes from a hybridization event
Standard error
How much uncertainty there is in tip values; a single number is applied to all taxa, a vector is applied to the corresponding taxa
In a hybridization event, what proportion of the trait comes from the donating parent. 0.5 means half comes from each parent
Returns the variance-covariance matrix