BOGstat

db_Gene

his argument works with ''alternative'' argument.

conditional

This argument works with ''conditional'' argument.

alternative

In statistical analysis, BOG uses local-fdr as a score for strength of evidence for differences between groups. The smaller absolute value of local fdr, the stronger is the evidence for differences in gene expression. fdr.cutoff is a threshhold used in hy

fdr.cutoff

By default, gsea is set FALSE so that unless user specify it to be TRUE, BOG does not perform GSEA test.

gsea

It is the alpha used in p-value calculation in GSEA. By default, gsea.fdr.alpha=0.05.

gsea.fdr.alpha

This is an internal function so that it is not expected for a user to use it.

It is designed to identify COG (Cluster of Orthologous
        Groups) that are either over or under-represented among genes
        that show differential expression under two different
        conditions using statistical analysis and graphical
        representations.

Jincheol Park

Bacterium and virus analysis of Orthologous Groups (BOG) is a
        package for identifying differentially regulated genes in the
        light of gene functions.

BOGstat: BOGstat

Description

Usage

Arguments