bipartiteGibbs

0th

Percentile

Gibbs Sampler Used for Beta Record Linkage

Run a Gibbs sampler to explore the posterior distribution of bipartite matchings that represent the linkage of the datafiles in beta record linkage.

Usage
bipartiteGibbs(cd, nIter = 1000, a = 1, b = 1, aBM = 1, bBM = 1, seed = 0)
Arguments
cd

a list with the same structure as the output of the function compareRecords, containing:

comparisons

matrix with n1*n2 rows, where the comparison pattern for record pair \((i,j)\) appears in row (j-1)*n1+i, for \(i\) in \({1,\dots,n1}\), and \(j\) in \({1,\dots,n2}\). A comparison field with \(L+1\) levels of disagreement, is represented by \(L+1\) columns of TRUE/FALSE indicators. Missing comparisons are coded as FALSE, which is justified under an assumption of ignorability of the missing comparisons, see Sadinle (2017).

n1,n2

the datafile sizes, n1 = nrow(df1) and n2 = nrow(df2).

nDisagLevs

a vector containing the number of levels of disagreement per comparison field.

compFields

a data frame containing the names of the fields in the datafiles used in the comparisons and the types of comparison.

nIter

number of iterations of Gibbs sampler.

a, b

hyper-parameters of the Dirichlet priors for the \(m\) and \(u\) parameters in the model for the comparison data among matches and non-matches, respectively. These can be vectors with as many entries as disagreement levels among all comparison fields. If specified as positive constants, they get recycled to the required length. If not specified, flat priors are taken.

aBM, bBM

hyper-parameters of beta prior on bipartite matchings. Default is aBM=bBM=1.

seed

seed to be used for pseudo-random number generation. By default it sets seed=0.

Value

a list containing:

Z

matrix with n2 rows and nIter columns containing the chain of bipartite matchings. A number smaller or equal to n1 in row j indicates the record in datafile 1 to which record j in datafile 2 is linked at that iteration, otherwise n1+j.

m,u

chain of \(m\) and \(u\) parameters in the model for the comparison data among matches and non-matches, respectively.

References

Mauricio Sadinle (2017). Bayesian Estimation of Bipartite Matchings for Record Linkage. Journal of the American Statistical Association 112(518), 600-612. [Published] [arXiv]

Aliases
  • bipartiteGibbs
Examples
# NOT RUN {
data(twoFiles)

myCompData <- compareRecords(df1, df2, flds=c("gname", "fname", "age", "occup"), 
                             types=c("lv","lv","bi","bi"))

chain <- bipartiteGibbs(myCompData)
# }
Documentation reproduced from package BRL, version 0.1.0, License: GPL-3

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