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BRugs (version 0.4-1)
OpenBUGS and its R / S-PLUS interface BRugs
Description
An R / S-PLUS package containing OpenBUGS and its R / S-PLUS interface BRugs.
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Install
install.packages('BRugs')
Monthly Downloads
1,022
Version
0.4-1
License
GPL version 2
Maintainer
Uwe Ligges with contributions from Andrea Preusser
Last Published
September 18th, 2007
Functions in BRugs (0.4-1)
Search functions
modelPrecision
Setting precision for prec figures
BRugsFit
BRugs' meta function
samplesCorrel
Correlation
modelAdaptivePhase
Getting length of adaptive phase
modelIteration
Returns number of iterations
modelGenInits
Generating initial values
samplesStats
Calculate summary statistics
modelSetAP
Changing settings of updating algorithms
bugsInits
Writing input for OpenBUGS
BRugs
Introduction to BRugs
modelModules
Loaded modules
writeModel
Creating an OpenBUGS model file
plotAutoC
Plot autocorrelation function for a scalar variable
help.WinBUGS
WinBUGS documentation
modelNames
Get variable names in model
write.datafile
Write data for OpenBUGS - intended for internal use only
plotHistory
Trace of a scalar variable
bugsData
Writing input for OpenBUGS
samplesSet
Start recording
dimensions
Dimension of BUGS variables
buffer
Reading OpenBUGS buffer file
modelCheck
Checking the model file
modelDynamic
Controlling Dynamic Compilation
modelSeed
Seed of Random Number Generator
samplesDensity
Plot density estimate or histogram
getChain
Current chain to be initialized
modelSaveState
Save the model's current state
samplesSize
Size of the stored sample
modelData
Loading the data
summary
Summary of MCMC simulation
buildMCMC
Generating mcmc.list objects for package coda
samplesCoda
Writing files in CODA format
samplesMonitors
Names of monitored scalar variables
modelUpdate
Updating the model
modelInits
Loading initial values
samplesAutoC
Plot autocorrelation function
samplesHistory
Trace of a variable
rats
ratsdata example
bgrPoint
Internal functions (to support plotting the Gelman-Rubin convergence statistic)
getNumChains
Number of chains
samplesSample
Stored values
currentValues
Last sampled values
plotDensity
Plot density estimate or histogram of a scalar variable
ranks
Calculation of ranks
dic
DIC
samplesClear
Clear recorded values
samplesSetting
Change settings used for calculations
setValues
Setting current values
samplesGet
Get settings used for calculations
samplesBgr
Plot the Gelman-Rubin convergence statistic
modelCompile
Compiling the model
modelFactory
Enable and disable factories to create updaters
plotBgr
Plot the Gelman-Rubin convergence statistic for a scalar variable