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BSL (version 0.1.1)

Bayesian Synthetic Likelihood with Graphical Lasso

Description

Bayesian synthetic likelihood (BSL, Price et al. (2018) ) is an alternative to standard, non-parametric approximate Bayesian computation (ABC). BSL assumes a multivariate normal distribution for the summary statistic likelihood and it is suitable when the distribution of the model summary statistics is sufficiently regular. This package provides a Metropolis Hastings Markov chain Monte Carlo implementation of BSL and BSL with graphical lasso (BSLasso, An et al. (2018) ), which is computationally more efficient when the dimension of the summary statistic is high. Extensions to this package are planned.

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Version

Install

install.packages('BSL')

Monthly Downloads

338

Version

0.1.1

License

GPL (>= 2)

Maintainer

Ziwen An

Last Published

March 23rd, 2018

Functions in BSL (0.1.1)

BSL-package

Bayesian synthetic likelihood
bsl

Performing BSL and BSLasso
selectPenalty

Selecting BSLasso Penalty
mgnk

The multivariate G&K example
ma2

An MA(2) model
cell

Cell biology example
plot

Plotting BSL and BSLasso Results