BSPADATA (version 1.1.0)

hom_general: Bayesian fitting of Spatial General Model with homoscedastic normal error term.

Description

Performs the Bayesian fitting of Homoscedastic General Model with normal error term

Usage

hom_general(formula, data,W1,W2=NULL, nsim, burn, step,prior,
            initial, kernel = "normal",mateq=TRUE,impacts=TRUE,seed=0)

Arguments

formula

Object of class formula with the description of the model to be fitted.

data

Data frame object with covariates of model

W1

Object of class matrix, nb or listw related to Spatial Contiguity Matrix for response variable, Anselin(1988)

W2

Object of class matrix, nb or listw related to Spatial Contiguity Matrix for disturbance terms, Anselin(1988)

nsim

A number that indicates the amount of iterations

burn

A number that indicates the amount of iterations to be burn at the beginning of the chain

step

A number that indicates the length between samples in chain that generate the point estimates for each parameter.

prior

List with prior distributions of the parameters in the hom_sem model

initial

List with the initial values for the chains of each the parameters of the hom_sem model

kernel

Distribution used in transition kernel to get samples of lambda, it can be "uniform" or "normal"

mateq

Logical variable indicating whether W1=w2 or not.

impacts

If impacts=TRUE then impacts for the model are computed, as suggested in Le Sage and Pace (2009).

seed

Random seed for generating the samples of the posterior distributions.

Value

List with the following:

summary

Data frame with summary statistics of the marginal posterior distributions of the parameters of the model

Acceptance_Rate

Acceptance rate for the samples of rho and lambda

Criteria

List with values of both the Bayesian Information Criterion (BIC) and the Deviance Information Criterion (DIC)

chains

Object of class mcmc with the samples of the marginal posterior distribution of each of the parameters of the model

impacts

Summary of the impacts for each explanatory variable of the model

Details

hom_general is a function made in order to fit Spatial General Model with a normal homoscedatic disturbance term through MCMC methods as Metropolis-Hastings algorithm, under two proposals for trasition kernel to get samples of spatial responde and error lag parameters, rho and lambda, respectively.

References

1. Cepeda C. E. (2001). Modelagem da variabilidade em modelos lineares generalizados. Unpublished Ph.D. tesis. Instituto de Matematicas. Universidade Federal do Rio do Janeiro.

2.Cepeda, E. and Gamerman D. (2005). Bayesian Methodology for modeling parameters in the two-parameter exponential family. Estadistica 57, 93 105.

3.Cepeda C., E. and Gamerman D. (2001). Bayesian Modeling of Variance Heterogeneity in Normal Regression Models. Brazilian Journal of Probability and Statistics. 14, 207-221.

4.Luc Anselin, Spatial Econometrics: Methods and Models, Kluwer Academic, Boston, 1988.

5. D. Gamerman, Markov Chains Monte Carlo: Stochastic Simulation for bayesian Inference, Chapman and Hall, 1997.

6. James Le Sage and Kelley Pace, Introduction to Spatial Econometrics, Chapman & Hall/CRC, Boca Raton, 2009.

Examples

# NOT RUN {
data(oldcol)
n=49
x0=rep(1,n)
x1=runif(n,0,400)
x2=runif(n,10,23)
X=cbind(x0,x1,x2)
sigma2=rep(45,n)
Sigma=diag(sigma2)
W1=COL.nb
matstand=nb2mat(W1)
A=diag(n)-0.75*matstand
B=diag(n)-0.20*matstand
miu=solve(A)%*%(18+0.026*x1-0.4*x2)
Sigma2=t(solve(A)%*%solve(B))%*%Sigma%*%solve(A)%*%solve(B)
y=t(rmvnorm(1,miu,Sigma2))

formula <- y ~ x0 + x1 + x2
data <- data.frame(y=y,x0=x0,x1=x1,x2=x2)
prior <- list(b_pri=rep(0,3),B_pri=diag(rep(1000,3)),
              r_pri=0.01,lambda_pri=0.01)
initial <- list(beta_0=rep(0,3),
                sigma2_0=90,rho_0=0.5,lambda_0=0.5)
hom_general(formula=formula,data=data,W1=COL.nb,nsim=500,burn=25,step=5,
              prior=prior,initial=initial,kernel="normal",mateq=TRUE)


# }