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BSagri (version 0.1-6)

Statistical methods for safety assessment in agricultural field trials

Description

Collection of functions, data sets and code examples for evaluations of field trials with the objective of safety assessment.

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Version

Install

install.packages('BSagri')

Monthly Downloads

182

Version

0.1-6

License

GPL

Maintainer

Frank Schaarschmidt

Last Published

October 29th, 2012

Functions in BSagri (0.1-6)

minus2slash

Replace - by / in character strings
CIGLM

Wrapper to compute confidence intervals from glms
plotCI.Methods

Plot confidence intervals calculated by pairwiseCI
CCRatio.boot

Compute ratio contrasts of chains of joint empirical distributions.
Decomp

A simulated data set
MM1

Simulated data set for a simple mixed model
Lepi

Insect counts of 12 Species
R2Bugsdat1w

For internal use
simplesimint

Simultaneous confidence intervals from raw estimates
SCSnp

Simultaneous confidence sets from empirical joint distribution.
ExNBCov

Simulated example data, drawn from a Negative Binomial Distribution
c2compnames

Define row names of a contrast matrix, depending on its column names
modelparm.methods

For internal use. Extract model parameters needed for multcomp from objects of class gamlss or geeglm.
print.SCSnp

Print function for SCSnp
CInp

Construct local confidence intervals from joint empirical distribution.
Feeding

Pupation and Hatching rate in a feeding experiment with four varieties
vcov.gamlss

Extract variance covariance matrix from objects of class gamlss
print.simplesimint

Print objects of class "simplesimint"
CCRatio.default

Compute ratio contrasts of chains of joint empirical distributions.
Diptera

Soil eklektor data for some families of Diptera
CCDiff

Contrasts of parameters simulated in BUGS
Cica1

Catches of Planthoppers and Leafhoppers
IAcontrasts

Interaction contrasts for 2-factorial designs
MMPois

Simulated data for a simple mixed model with Poisson response
print.CInp

Print function for CInp
Cica2

Catches of Planthoppers and Leafhoppers
BOOTSimpson

Simultaneous confidence intervals for Simpson indices
CCRatio

Ratio - contrasts of parameters simulated in BUGS
CountRep

Synthetic repeated count data set
ExPCov

Simulated example data following a Poisson distribution
vcov.geeglm

Extract variance covariance matrix from objects of class geeglm
MMPoisRep

Simulated data for a simple mixed model with Poisson response
allignment

Allignment according to one factor
summary.simplesimint

Detailed print out for simplesimint objects
Nematocera

Eklektor counts of Nematocera
checkargssim

For internal use.
CCDiff.boot

Compute contrasts of chains of joint empirical distributions.
Brachycera

Eklektor counts of Brachycera
CCDiff.default

Compute contrasts of chains of joint empirical distributions.
IAcontrastsCMAT

Interaction contrasts for a two-factorial design
UnlogCI

Transform confidence intervals from glm fits and geeglm fits.
R2Bugsdat1w.data.frame

For internal use.
fakeln

A simulated data set of lognormal data
print.UnlogCI

Print function for UnlogCI