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BSgenome (version 1.40.1)

Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation

Description

Infrastructure shared by all the Biostrings-based genome data packages

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Version

Version

1.40.1

License

Artistic-2.0

Maintainer

H Pages

Last Published

February 15th, 2017

Functions in BSgenome (1.40.1)

getSeq-methods

getSeq methods for BSgenome and XStringSet objects
available.genomes

Find available/installed genomes
bsapply

bsapply
injectSNPs

SNP injection
SNPlocs-class

SNPlocs objects
BSgenomeForge

The BSgenomeForge functions
BSgenomeViews-class

BSgenomeViews objects
XtraSNPlocs-class

XtraSNPlocs objects
BSgenome-class

BSgenome objects
BSgenome-utils

BSgenome utilities
BSParams-class

Class "BSParams"
export-methods

Export a BSgenome object as a FASTA or twoBit file