hapBVS

 
    an <em>(n x g)</em> matrix of a subset of <em>g</em> SNPs of interest that are each coded as a numeric variable that corresponds to the number of copies of minor alleles (0|1|2)


    the minimum haplotype frequency of which an estimated haplotype is reported

min.Hap.freq


  This function takes a subset of variants and estimates a set of haplotypes.  Only haplotypes with a frequency greater than min.Hap.freq are reported. 


 haplotypes 

The functions in this package focus on analyzing
case-control association studies involving a group of genetic
variants.  In particular, we are interested in modeling the
outcome variable as a function of a multivariate genetic
profile using Bayesian model uncertainty and variable selection
techniques.  The package incorporates functions to analyze data
sets involving common variants as well as extensions to model
rare variants via the Bayesian Risk Index (BRI) as well as
haplotypes.  Finally, the package also allows the incorporation
of external biological information to inform the marginal
inclusion probabilities via the iBMU.

hapBVS: Function to estimate and report a set of haplotypes given a subset of variants

Description

Usage

Arguments

Value