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BaSTA (version 1.9.1)

A package for estimating age-specific survival from incomplete capture-recapture/recovery data

Description

This package estimates survival and mortality with covariates from capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots.

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Version

Install

install.packages('BaSTA')

Monthly Downloads

618

Version

1.9.1

License

GPL

Maintainer

Fernando Colchero

Last Published

January 22nd, 2014

Functions in BaSTA (1.9.1)

A function to check the input data file for a Bayesian Survival Trajectory Analysis (BaSTA) analysis.

A function for calculating standard cohort-based life tables from age at death data.

BaSTA: a package for parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture/recovery records.

Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated dataset

Simulated dataset to demonstrate Bayesian Survival Trajectory Analysis (BaSTA)

Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.

Function to build a matrix of covariates (i.e. design matrix) for a Bayesian Survival Trajectory Analysis (BaSTA) analysis.

Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-recapture/recovery data.

CensusToCaptHist

Constructs capture-history matrix from census matrix to be used in Bayesian Survival Trajectory Analysis (BaSTA).

Function to run multiple BaSTA models on the same dataset.