BacArena

BacArena-package


The BacArena package provides six classes: Arena (subclass Eval), Organism (subclasses Bac, Human) and Substance.
Accordingly there are three categories of important functions:
Arena, Organism and Substance.


Can be used for simulation of organisms living in
communities. Each organism is represented individually and genome scale
metabolic models determine the uptake and release of compounds. Biological
processes such as movement, diffusion, chemotaxis and kinetics are available
along with data analysis techniques.

Johannes Zimmermann

Modeling Framework for Cellular Communities in their
Environments

BacArena: BacArena: An Agent-Based Modeling Framework for Cellular Communities

Description

Arguments

Arena functions

Organism functions

Substance functions