Organism

Organism-constructor

model

A single character string giving the name of the algorithm to use. See <a rd-options="sybil" href="/link/SYBIL_SETTINGS?package=BacArena&version=1.0.1&to=sybil" data-mini-rdoc="sybil::SYBIL_SETTINGS">SYBIL_SETTINGS</a>

algo

ex_comp

csuffix

esuffix

A boolean variable indicating if the organism should lyse after death.

lyse

A list containing conditional features for the object (contains at the momement only biomass components for lysis).

feat

A string defining the name (set to model name in default case)

typename

Arguments of <code><a rd-options="" href="/link/Organism-class?package=BacArena&version=1.0.1" data-mini-rdoc="BacArena::Organism-class">Organism-class</a></code>


The constructor to get a new object of class <code>Organism</code>


Can be used for simulation of organisms living in
communities. Each organism is represented individually and genome scale
metabolic models determine the uptake and release of compounds. Biological
processes such as movement, diffusion, chemotaxis and kinetics are available
along with data analysis techniques.

Organism-constructor: Constructor of the S4 class `Organism`

Description

Usage

Arguments

Value