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BarcodingR (version 1.0-3)

Species Identification using DNA Barcodes

Description

To perform species identification using DNA barcodes.

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Version

Install

install.packages('BarcodingR')

Monthly Downloads

281

Version

1.0-3

License

GPL-2

Maintainer

Aibing ZHANG

Last Published

April 14th, 2020

Functions in BarcodingR (1.0-3)

barcoding.spe.identify

Species Identification using Protein-coding Barcodes
barcodes.eval

Barcodes Evaluation
TibetanMoth

Tibetan Moth
FMF

Fuzzy Membership Function Value
DNAbin2kmerFreqMatrix

Calculation of Kmer Frequency Matrix from DNAbin for Both Reference and Query Sequences
TDR2

TDR2 Species Membership Value
compare2delimitations

Comparision between two Delimitations
digitize.DNA

Digitize DNAbin
char2NumVector

Character to Integer Vector
pineMothCOI

pine Moth COI
optimize.kmer

Optimize kmer Length
pineMothITS1

pine Moth ITS1
sample.ref

Sample Random Datasets from References (DNAbin)
FMFtheta12

Calculate Intraspecific and Interspecific Variation
bbsik

Bp Barcoding Species Identify using Kmer
pineMothITS2

pine Moth ITS2
NAMES

Extracts Lables of Samples
consensus.identify

Consensus Identification
save.ids

Save Identifications
summarize.ref

Summarize Reference Data
barcoding.spe.identify2

Species Identification Based on Fuzzy-set Method and kmer
barcoding.gap

Barcoding Gap Calculation