drawDigestionFragmentHistogram

drawDigestionFragmentHistogram,data.frame-method

Fragment data to visualize (data frame with lengths and corresponding frequencies)

fragments

minLength

maxLength


This function is a small convenience function to plot the results of <code>simulateDigestion</code> as a histogram. Minimum and maximum fragment lengths can be specified to visualize a specified interval of the fragment data.


Basic4Cseq is an R/Bioconductor package for basic
filtering, analysis and subsequent visualization of 4C-seq
data. Virtual fragment libraries can be created for any
BSGenome package, and filter functions for both reads and
fragments and basic quality controls are included. Fragment
data in the vicinity of the experiment's viewpoint can be
visualized as a coverage plot based on a running median
approach and a multi-scale contact profile.

Carolin Walter

Basic4Cseq

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

drawDigestionFragmentHistogram function

This function is a small convenience function to plot the results of <code>simulateDigestion</code> as a histogram. Minimum and maximum fragment lengths can be specified to visualize a specified interval of the fragment data.

drawDigestionFragmentHistogram: Visualize digestion fragments with a histogram

Description

Usage

Arguments

Value

Examples